CURRENT RESEARCH INTERESTS
- Computational systems biology
- Human microbiome in health and disease
- Biological networks and phenotype prediction
- Quantitative modelling and big data analysis
EDITORIAL MEMBERSHIP
- Editorial Board, Scientific Reports, 2019 – Present
AWARDS
- Yong-Bong Prize, Korean Physical Society, 2018
- Young Physicist Award, Korean Physical Society, 2008
SELECTED PUBLICATIONS
- R. Lim, J. J. T. Cabatbat, T. L. P. Martin, H. Kim, S. Kim, J. Sung, C.-M. Ghim, P.-J. Kim (2020) Large-scale metabolic interaction network of the mouse and human gut microbiota, Sci. Data 7, 204
- H.-H. Jo, Y. J. Kim, J. K. Kim, M. Foo, D. E. Somers, P.-J. Kim (2018) Waveforms of molecular oscillations reveal circadian timekeeping mechanisms, Commun. Biol. 1, 207
- S. Kim, M. F. Fenech, P.-J. Kim (2018) Nutritionally recommended food for semi- to strict vegetarian diets based on large-scale nutrient composition data, Sci. Rep. 8, 4344
- J. Sung, S. Kim, J. J. T. Cabatbat, S. Jang, Y.-S. Jin, G. Y. Jung, N. Chia, P.-J. Kim (2017) Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis, Nat. Commun. 8, 15393
- J.-S. Kim, D.-H. Cho, P. Heo, S.-C. Jung, M. Park, E.-J. Oh, J. Sung, P.-J. Kim, S. Lee, D.-H. Lee, S. Lee, C. H. Lee, D. Shin, Y.-S. Jin, D.-H. Kweon (2016) Fumarate-mediated persistence of Escherichia coli against antibiotics, Antimicrob. Agents Chemother. 60, 2232
- M. Foo, D. E. Somers, P.-J. Kim (2016) Kernel architecture of the genetic circuitry of the Arabidopsis circadian system, PLOS Comput. Biol. 12, e1004748
- Y. Lee, W. Hwang, J. Jung, S. Park, J. J. T. Cabatbat, P.-J. Kim, S.-J. V. Lee (2016) Inverse correlation between longevity and developmental rate among wild C. elegans strains, Aging 8, 986
- S. Kim, J. Sung, M. Foo, Y.-S. Jin, P.-J. Kim (2015) Uncovering the nutritional landscape of food”, PLOS ONE 10, e0118697
- J. Yun, P.-J. Kim, H. Jeong (2015) Anatomy of scientific evolution, PLOS ONE 10, e0117388
- P.-J. Kim (2014) Systems biology: communication between physics and biology, Physics and High Technology 23, 10
- Y. Dong, C. G. Kumar, N. Chia, P.-J. Kim, P. A. Miller, et al. (2014) Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir, Environ. Microbiol. 16, 1695
- J. Sung, P.-J. Kim, S. Ma, C. C. Funk, A. T. Magis, Y. Wang, L. Hood, D. Geman, N. D. Price (2013) Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures, PLoS Comput. Biol. 9, e1003148
- P.-J. Kim, N. D. Price (2011) Genetic co-occurrence network across sequenced microbes, PLoS Comput. Biol. 7, e1002340
- S. H. Lee, P.-J. Kim, H. Jeong (2011) Global organization of protein complexome in the yeast Saccharomyces cerevisiae, BMC Syst. Biol. 5, 126
- P.-J. Kim, N. D. Price (2010) Macroscopic kinetic effect of cell-to-cell variation in biochemical reactions, Phys. Rev. Lett. 104, 148103
- S. H. Lee, P.-J. Kim, Y.-Y. Ahn, H. Jeong (2010) Googling social interactions: Web search engine based social network construction, PLoS ONE 5, e11233
- P.-J. Kim, D.-Y. Lee, H. Jeong (2009) Centralized modularity of N-linked glycosylation pathways in mammalian cells, PLoS ONE 4, e7317
- C. B. Milne, P.-J. Kim, J. A. Eddy, N. D. Price (2009) Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology, Biotechnol. J. 4, 1653
- P.-J. Kim, D.-Y. Lee, T. Y. Kim, K. H. Lee, H. Jeong, S. Y. Lee, S. Park (2007) Metabolite essentiality elucidates robustness of Escherichia coli metabolism, Proc. Natl. Acad. Sci. USA 104, 13638
- P.-J. Kim, T.-W. Ko, H. Jeong, K. J. Lee, S. K. Han (2007) Emergence of chaotic itinerancy in simple ecological systems, Phys. Rev. E 76, 065201(R)
- P.-J. Kim, H. Jeong (2007) Reliability of rank order in sampled networks, Eur. Phys. J. B 55, 109
- S. H. Lee, P.-J. Kim, H. Jeong (2006) Statistical properties of sampled networks, Phys. Rev. E 73, 016102
- P.-J. Kim, H. Jeong (2005) Spatio-temporal dynamics in the origin of genetic information, Physica D 203, 88
- P.-J. Kim, T.-W. Ko, H. Jeong, H.-T. Moon (2004) Pattern formation in a two-dimensional array of oscillators with phase-shifted coupling, Phys. Rev. E 70, 065201(R)
CONTACT DETAILS
Email: panjunkim(at)hkbu(dot)edu(dot)hk
Office: RRS 835
Office Tel: (+852) 3411 5855
External Website Link: http://panjunkim.com
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