DR. KIM, Pan-Jun (金判俊)

Assistant Professor, Department of Biology
Affiliated, Centre for Quantitative Systems Biology and Institute of Computational and Theoretical Studies
Regular Associate, Abdus Salam International Centre for Theoretical Physics

EDUCATION

Ph.D. in Physics (KAIST)
M.S. in Physics (KAIST)
B.S. in Physics (KAIST)

CURRENT RESEARCH INTERESTS

  • Computational systems biology
  • Human microbiome in health and disease
  • Biological networks and phenotype prediction
  • Quantitative modelling and big data analysis

RESEARCH GRANTS

  • Global interaction network of the human microbiota, Source: Basic Science Research Program of the National Research Foundation of Korea (NRF) (2015R1C1A1A02037045), Duration: 07/2015 – 02/2018, PI: P.-J. Kim
  • Deciphering complex networks from large-scale data, Source: Basic Science Research Program of the National Research Foundation of Korea (NRF) (2012R1A1A2008925), Duration: 05/2012 – 04/2015, PI: P.-J. Kim

AWARDS

  • Yong-Bong Prize, Korean Physical Society, 2018
  • Young Physicist Award, Korean Physical Society, 2008

SELECTED PUBLICATIONS

  1. S. Kim, M. F. Fenech, P.-J. Kim (2018) Nutritionally recommended food for semi- to strict vegetarian diets based on large-scale nutrient composition data, Sci. Rep. 8, 4344
  2. J. Sung, S. Kim, J. J. T. Cabatbat, S. Jang, Y.-S. Jin, G. Y. Jung, N. Chia, P.-J. Kim (2017) Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis, Nat. Commun. 8, 15393
  3. J.-S. Kim, D.-H. Cho, P. Heo, S.-C. Jung, M. Park, E.-J. Oh, J. Sung, P.-J. Kim, S. Lee, D.-H. Lee, S. Lee, C. H. Lee, D. Shin, Y.-S. Jin, D.-H. Kweon (2016) Fumarate-mediated persistence of Escherichia coli against antibiotics, Antimicrob. Agents Chemother. 60, 2232
  4. M. Foo, D. E. Somers, P.-J. Kim (2016) Kernel architecture of the genetic circuitry of the Arabidopsis circadian system, PLOS Comput. Biol. 12, e1004748
  5. Y. Lee, W. Hwang, J. Jung, S. Park, J. J. T. Cabatbat, P.-J. Kim, S.-J. V. Lee (2016) Inverse correlation between longevity and developmental rate among wild C. elegans strains, Aging 8, 986
  6. S. Kim, J. Sung, M. Foo, Y.-S. Jin, P.-J. Kim (2015) Uncovering the nutritional landscape of food”, PLOS ONE 10, e0118697
  7. J. Yun, P.-J. Kim, H. Jeong (2015) Anatomy of scientific evolution, PLOS ONE 10, e0117388
  8. P.-J. Kim (2014) Systems biology: communication between physics and biology, Physics and High Technology 23, 10
  9. Y. Dong, C. G. Kumar, N. Chia, P.-J. Kim, P. A. Miller, et al. (2014) Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir, Environ. Microbiol. 16, 1695
  10. J. Sung, P.-J. Kim, S. Ma, C. C. Funk, A. T. Magis, Y. Wang, L. Hood, D. Geman, N. D. Price (2013) Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures, PLoS Comput. Biol. 9, e1003148
  11. P.-J. Kim, N. D. Price (2011) Genetic co-occurrence network across sequenced microbes, PLoS Comput. Biol. 7, e1002340
  12. S. H. Lee, P.-J. Kim, H. Jeong (2011) Global organization of protein complexome in the yeast Saccharomyces cerevisiae, BMC Syst. Biol. 5, 126
  13. P.-J. Kim, N. D. Price (2010) Macroscopic kinetic effect of cell-to-cell variation in biochemical reactions, Phys. Rev. Lett. 104, 148103
  14. S. H. Lee, P.-J. Kim, Y.-Y. Ahn, H. Jeong (2010) Googling social interactions: Web search engine based social network construction, PLoS ONE 5, e11233
  15. P.-J. Kim, D.-Y. Lee, H. Jeong (2009) Centralized modularity of N-linked glycosylation pathways in mammalian cells, PLoS ONE 4, e7317
  16. C. B. Milne, P.-J. Kim, J. A. Eddy, N. D. Price (2009) Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology, Biotechnol. J. 4, 1653
  17. P.-J. Kim, D.-Y. Lee, T. Y. Kim, K. H. Lee, H. Jeong, S. Y. Lee, S. Park (2007) Metabolite essentiality elucidates robustness of Escherichia coli metabolism, Proc. Natl. Acad. Sci. USA 104, 13638
  18. P.-J. Kim, T.-W. Ko, H. Jeong, K. J. Lee, S. K. Han (2007) Emergence of chaotic itinerancy in simple ecological systems, Phys. Rev. E 76, 065201(R)
  19. P.-J. Kim, H. Jeong (2007) Reliability of rank order in sampled networks, Eur. Phys. J. B 55, 109
  20. S. H. Lee, P.-J. Kim, H. Jeong (2006) Statistical properties of sampled networks, Phys. Rev. E 73, 016102
  21. P.-J. Kim, H. Jeong (2005) Spatio-temporal dynamics in the origin of genetic information, Physica D 203, 88
  22. P.-J. Kim, T.-W. Ko, H. Jeong, H.-T. Moon (2004) Pattern formation in a two-dimensional array of oscillators with phase-shifted coupling, Phys. Rev. E 70, 065201(R)

CONTACT DETAILS

Email: panjunkim(at)hkbu(dot)edu(dot)hk
Office: T702
Office Tel: (+852) 3411 5855
External Website Link: http://panjunkim.com