1. Dongying Xie, Yiming Ma, Pohao Ye, Yiqing Liu, Qiutao Ding, Gefei Huang, Marie-Anne Felix, Zongwei Cai, and Zhongying Zhao. "A newborn F-box Gene blocks gene flow by selectively degrading phosphoglucomutase in species Hybrids." Proceedings of the National Academy of Sciences46 (2024): e2418037121.
2. Li, Zelin#, Dongying Xie#, Yiming Ma#, Cunmin Zhao, Sicheng You, Hong Yan, and Zhongying Zhao. "Deep learning-based enhancement of fluorescence labeling for accurate cell lineage tracing during embryogenesis." Bioinformatics 40, no. 11 (2024): btae626. #equal contribution
3. Dongying Xie, Bida Gu, Yiqing Liu, Pohao Ye, Yiming Ma, Tongshu Wen, Xiaoyuan Song, and Zhongying Zhao. "Efficient targeted recombination with CRISPR/Cas9 in hybrids of Caenorhabditis nematodes with suppressed recombination." BMC biology 21, no. 1 (2023): 203.
4. Dongying Xie, Pohao Ye, Yiming Ma, Yongbin Li, Xiao Liu, Peter Sarkies, and Zhongying Zhao. "Genetic exchange with an outcrossing sister species causes severe genome-wide dysregulation in a selfing Caenorhabditis" Genome Research 32, no. 11-12 (2022): 2015-2027.
5. Dongying Xie#, Hin Chu#, Dong Yang#, Qiutao Ding, Gefei Huang, Luo Chen, Zongwei Cai, Jiandong Huang, and Zhongying Zhao. “A stark difference in the profiles of defective viral transcripts between SARS-CoV-2 and SARS-CoV.” Journal of Infection 83, no. 3 (2021): 381-412. #equal contribution
6. Gefei Huang, Feng Zhang, Dongying Xie, Yiming Ma, Pengxi Wang, Guodong Cao, Leijian Chen, Siyi Lin, Zhongying Zhao, and Zongwei Cai. "High-throughput profiling of RNA modifications by ultra-performance liquid chromatography coupled to complementary mass spectrometry: Methods, quality control, and applications." Talanta 263 (2023): 124697.
7. Gefei Huang, Yiming Ma, Dongying Xie, Cunmin Zhao, Lin Zhu, Guangshan Xie, Pengfei Wu, Wei Wang, Zhongying Zhao, and Zongwei Cai. "Evaluation of nanoplastics toxicity in the soil nematode Caenorhabditis elegans by iTRAQ-based quantitative proteomics." Science of The Total Environment 862 (2023): 160646.
8. Ming-Kin Wong, Vincy Wing Sze Ho, Xiaotai Huang, Lu-Yan Chan, Dongying Xie, Runsheng Li, Xiaoliang Ren et al. "Initial characterization of gap phase introduction in every cell cycle of elegans embryogenesis." Frontiers in Cell and Developmental Biology 10 (2022): 978962.
9. Qiutao Ding, Xiaoliang Ren, Runsheng Li, Luyan Chan, Vincy WS Ho, Yu Bi, Dongying Xie, and Zhongying Zhao. "Highly efficient transgenesis with miniMos in Caenorhabditis briggsae." G3 12, no. 12 (2022): jkac254.
10. Qiutao Ding, Runsheng Li, Xiaoliang Ren, Lu-yan Chan, Vincy WS Ho, Dongying Xie, Pohao Ye, and Zhongying Zhao. “Genomic architecture of 5S rDNA cluster and its variations within and between species.” BMC genomics 23, no. 1 (2022): 1-20.
11. Baojiang Wang, Yueyuan Qin, Qunyan Wu, Xi Li, Dongying Xie, Zhongying Zhao, and Shan Duan. “mTOR Signaling Pathway Regulates the Release of Proinflammatory Molecule CCL5 Implicated in the Pathogenesis of Autism Spectrum Disorder.” Frontiers in Immunology 13 (2022): 818518.
12. Gefei Huang, Qiutao Ding, Dongying Xie, Zongwei Cai, and Zhongying Zhao. “Technical challenges in defining RNA modifications.” In Seminars in Cell & Developmental Biology. Academic Press, 2021.
13. Runsheng Li, Xiaoliang Ren, Qiutao Ding, Yu Bi, Dongying Xie, and Zhongying Zhao. “Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans” Genome research 30, no. 2 (2020): 287-298.
14. Yu Bi, Xiaoliang Ren, Runsheng Li, Qiutao Ding, Dongying Xie, and Zhongying Zhao. “Specific interactions between autosome and X chromosomes cause hybrid male sterility in Caenorhabditis” Genetics 212, no. 3 (2019): 801-813.
15. Yu Bi, Xiaoliang Ren, Cheung Yan, Jiaofang Shao, Dongying Xie, and Zhongying Zhao. “A Genome-wide hybrid incompatibility landscape between Caenorhabditis briggsae and nigoni.” PLoS genetics 11, no. 2 (2015): e1004993.
16. Jiaofang Shao, Kan He, Hao Wang, Wing Sze Ho, Xiaoliang Ren, Xiaomeng An, Ming Kin Wong, Bin Yan, Dongying Xie, John Stamatoyannopoulos, Zhongying Zhao. “Collaborative regulation of development but independent control of metabolism by two epidermis-specific transcription factors in Caenorhabditis elegans.” Journal of Biological Chemistry 288, no. 46 (2013): 33411-33426.