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DR. KIM, Pan-Jun (金判俊)

Assistant Professor

(+852) 3411 5855
(+852) 3411 5855
RRS 835

Education

Ph.D. in Physics (KAIST)
M.S. in Physics (KAIST)
B.S. in Physics (KAIST)

 

Affiliated, Centre for Quantitative Systems Biology, Institute of Computational and Theoretical Studies, and State Key Laboratory of Environmental and Biological Analysis

 

Regular Associate, Abdus Salam International Centre for Theoretical Physics

 

Award:

  • Yong-Bong Prize, Korean Physical Society, 2018
  • Young Physicist Award, Korean Physical Society, 2008

 

 

SELECTED PUBLICATIONS

  1. J. Chae, R. Lim, C.-M. Ghim, P.-J. Kim (2021) Backward simulation for inferring hidden biomolecular kinetic profiles, STAR Protoc. 2, 100958
  2. R. Lim, J. Chae, D. E. Somers, C.-M. Ghim, P.-J. Kim (2021) Cost-effective circadian mechanism: rhythmic degradation of circadian proteins spontaneously emerges without rhythmic post-translational regulation, iScience 24, 102726
  3. R. Lim, J. J. T. Cabatbat, T. L. P. Martin, H. Kim, S. Kim, J. Sung, C.-M. Ghim, P.-J. Kim (2020) Large-scale metabolic interaction network of the mouse and human gut microbiota, Sci. Data 7, 204
  4. H.-H. Jo, Y. J. Kim, J. K. Kim, M. Foo, D. E. Somers, P.-J. Kim (2018) Waveforms of molecular oscillations reveal circadian timekeeping mechanisms, Commun. Biol. 1, 207
  5. S. Kim, M. F. Fenech, P.-J. Kim (2018) Nutritionally recommended food for semi- to strict vegetarian diets based on large-scale nutrient composition data, Sci. Rep. 8, 4344
  6. J. Sung, S. Kim, J. J. T. Cabatbat, S. Jang, Y.-S. Jin, G. Y. Jung, N. Chia, P.-J. Kim (2017) Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis, Nat. Commun. 8, 15393
  7. J.-S. Kim, D.-H. Cho, P. Heo, S.-C. Jung, M. Park, E.-J. Oh, J. Sung, P.-J. Kim, S. Lee, D.-H. Lee, S. Lee, C. H. Lee, D. Shin, Y.-S. Jin, D.-H. Kweon (2016) Fumarate-mediated persistence of Escherichia coli against antibiotics, Antimicrob. Agents Chemother. 60, 2232
  8. M. Foo, D. E. Somers, P.-J. Kim (2016) Kernel architecture of the genetic circuitry of the Arabidopsis circadian system, PLOS Comput. Biol. 12, e1004748
  9. Y. Lee, W. Hwang, J. Jung, S. Park, J. J. T. Cabatbat, P.-J. Kim, S.-J. V. Lee (2016) Inverse correlation between longevity and developmental rate among wild C. elegans strains, Aging 8, 986
  10. S. Kim, J. Sung, M. Foo, Y.-S. Jin, P.-J. Kim (2015) Uncovering the nutritional landscape of food”, PLOS ONE 10, e0118697
  11. J. Yun, P.-J. Kim, H. Jeong (2015) Anatomy of scientific evolution, PLOS ONE 10, e0117388
  12. P.-J. Kim (2014) Systems biology: communication between physics and biology, Physics and High Technology 23, 10
  13. Y. Dong, C. G. Kumar, N. Chia, P.-J. Kim, P. A. Miller, et al. (2014) Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir, Environ. Microbiol. 16, 1695
  14. J. Sung, P.-J. Kim, S. Ma, C. C. Funk, A. T. Magis, Y. Wang, L. Hood, D. Geman, N. D. Price (2013) Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures, PLoS Comput. Biol. 9, e1003148
  15. P.-J. Kim, N. D. Price (2011) Genetic co-occurrence network across sequenced microbes, PLoS Comput. Biol. 7, e1002340
  16. S. H. Lee, P.-J. Kim, H. Jeong (2011) Global organization of protein complexome in the yeast Saccharomyces cerevisiae, BMC Syst. Biol. 5, 126
  17. P.-J. Kim, N. D. Price (2010) Macroscopic kinetic effect of cell-to-cell variation in biochemical reactions, Phys. Rev. Lett. 104, 148103
  18. S. H. Lee, P.-J. Kim, Y.-Y. Ahn, H. Jeong (2010) Googling social interactions: Web search engine based social network construction, PLoS ONE 5, e11233
  19. P.-J. Kim, D.-Y. Lee, H. Jeong (2009) Centralized modularity of N-linked glycosylation pathways in mammalian cells, PLoS ONE 4, e7317
  20. C. B. Milne, P.-J. Kim, J. A. Eddy, N. D. Price (2009) Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology, Biotechnol. J. 4, 1653
  21. P.-J. Kim, D.-Y. Lee, T. Y. Kim, K. H. Lee, H. Jeong, S. Y. Lee, S. Park (2007) Metabolite essentiality elucidates robustness of Escherichia coli metabolism, Proc. Natl. Acad. Sci. USA 104, 13638
  22. P.-J. Kim, T.-W. Ko, H. Jeong, K. J. Lee, S. K. Han (2007) Emergence of chaotic itinerancy in simple ecological systems, Phys. Rev. E 76, 065201(R)
  23. P.-J. Kim, H. Jeong (2007) Reliability of rank order in sampled networks, Eur. Phys. J. B 55, 109
  24. S. H. Lee, P.-J. Kim, H. Jeong (2006) Statistical properties of sampled networks, Phys. Rev. E 73, 016102
  25. P.-J. Kim, H. Jeong (2005) Spatio-temporal dynamics in the origin of genetic information, Physica D 203, 88
  26. P.-J. Kim, T.-W. Ko, H. Jeong, H.-T. Moon (2004) Pattern formation in a two-dimensional array of oscillators with phase-shifted coupling, Phys. Rev. E 70, 065201(R)